MolNFT v1 · #167872 · protein
Cryo-EM structure of M1214_N1 Fab in complex with CH505 tf chimeric SOSIP.664 env trimer
6VY2: “Cryo-EM structure of M1214_N1 Fab in complex with CH505 tf chimeric SOSIP.664 env trimer”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #167872 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VY2
- Type
- protein
- Length
- 2,442 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0A7I3C6, Q2N0S5
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E | — | protein | 458 | — | A0A0A7I3C6 |
| B, D, F | — | protein | 121 | — | Q2N0S5 |
| H, I, J | — | protein | 125 | — | — |
| L, M, N | — | protein | 110 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 120 copies · chains A, B, C, L, H, D, M, I, E, F, N, J
- BMA · beta-D-mannopyranose · sugar · 33 copies · chains E
- MAN · alpha-D-mannopyranose · sugar · 27 copies · chains L, H, A, M, I, C, N, J, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VY2 · Cryo-EM structure of M1214_N1 Fab in complex with CH505 TF chimeric SOSIP.664 Env trimer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A7I3C6
- Every structure of UniProt Q2N0S5
- Elsewhere: RCSB PDB 6VY2 · PDBe 6VY2 · UniProt A0A0A7I3C6 · UniProt Q2N0S5
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