MolNFT v1 · #167656 · protein

ADP bound TTBK2 kinase domain

6VRF: “ADP bound TTBK2 kinase domain”. X-ray diffraction, 4 ligands (ADP, NA, MG). MolNFT v1 #167656 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6VRF
Type: protein
Length: 574 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q6IQ55
Ligands: ADP, NA, MG, PO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	287	—	Q6IQ55

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
NA · Sodium ion · metal · 4 copies · chains A
MG · Magnesium ion · metal · 2 copies · chains A, B
PO4 · Phosphate ion · ion · 8 copies · chains A, B
GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6VRF · ADP bound TTBK2 kinase domain · the same entry in another collection · chain A against A, TM-score 1.00
Q6IQ55 · AlphaFold monomer V2.0 prediction for tau-tubulin kinase 2 (Q6IQ55) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6IQ55
Elsewhere: RCSB PDB 6VRF · PDBe 6VRF · UniProt Q6IQ55

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