MolNFT v1 · #167645 · protein
Aminoglycoside N-2'-acetyltransferase-ia [AAC(2')-ia] in complex with acetylated-netilmicin and CoA
6VR3: “Aminoglycoside N-2'-acetyltransferase-ia [AAC(2')-ia] in complex with acetylated-netilmicin and CoA”. X-ray diffraction, 2 ligands (NTL, COA). MolNFT v1 #167645 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VR3
- Type
- protein
- Length
- 352 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q52424
- Ligands
- NTL, COA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 177 | — | Q52424 |
| B | — | protein | 175 | — | Q52424 |
Ligands and binding sites
- NTL · N-[(2S,3R)-2-{[(1R,2S,3S,4R,6S)-6-amino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-lyxopyranosyl]oxy}-4-(ethylamino) -2-hydroxycyclohexyl]oxy}-6-(aminomethyl)-3,4-dihydro-2H-pyran-3-yl]acetamide · ligand · 2 copies · chains A, B
- COA · Coenzyme A · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VR3 · Aminoglycoside N-2'-Acetyltransferase-Ia [AAC(2')-Ia] in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q52424 · AlphaFold monomer V2.0 prediction for aminoglycoside 2'-N-acetyltransferase (Q52424) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q52424
- Elsewhere: RCSB PDB 6VR3 · PDBe 6VR3 · UniProt Q52424
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