MolNFT v1 · #167575 · protein
Human diacylglycerol acyltransferase 1 in complex with oleoyl-CoA
6VP0: “Human diacylglycerol acyltransferase 1 in complex with oleoyl-CoA”. Electron microscopy, 3 ligands (POV, 3VV, AV0). MolNFT v1 #167575 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VP0
- Type
- protein
- Length
- 812 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O75907
- Ligands
- POV, 3VV, AV0
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, E | — | protein | 406 | — | O75907 |
Ligands and binding sites
- POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate · ligand · 4 copies · chains C, E
- 3VV · S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3, 5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2, 4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name) · ligand · 2 copies · chains C, E
- AV0 · 2-decyl-2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}dodecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside · ligand · 2 copies · chains C, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VP0 · Human Diacylglycerol Acyltransferase 1 in complex with oleoyl-CoA · the same entry in another collection · chain C against C, TM-score 1.00
- O75907 · AlphaFold monomer V2.0 prediction for diacylglycerol O-acyltransferase 1 (O75907) · a predicted model of the same protein · chain C against A, TM-score 0.82
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75907
- Elsewhere: RCSB PDB 6VP0 · PDBe 6VP0 · UniProt O75907
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