GL1X · GenesisL1 explorer

MolNFT v1 · #167575 · protein

Human diacylglycerol acyltransferase 1 in complex with oleoyl-CoA

6VP0: “Human diacylglycerol acyltransferase 1 in complex with oleoyl-CoA”. Electron microscopy, 3 ligands (POV, 3VV, AV0). MolNFT v1 #167575 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6VP0
Type
protein
Length
812 residues
Chains
2
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
O75907
Ligands
POV, 3VV, AV0

Structure

electron microscopy · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
C, E—protein406—O75907

Ligands and binding sites

  • POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate · ligand · 4 copies · chains C, E
  • 3VV · S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3, 5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2, 4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name) · ligand · 2 copies · chains C, E
  • AV0 · 2-decyl-2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}dodecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside · ligand · 2 copies · chains C, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6VP0 · Human Diacylglycerol Acyltransferase 1 in complex with oleoyl-CoA · the same entry in another collection · chain C against C, TM-score 1.00
  • O75907 · AlphaFold monomer V2.0 prediction for diacylglycerol O-acyltransferase 1 (O75907) · a predicted model of the same protein · chain C against A, TM-score 0.82

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.