MolNFT v1 · #167485 · protein
SILV44 T cell receptor bound to HLA-A2 presenting GP100 peptide (itdqvpfsv)
6VM7: “SILV44 T cell receptor bound to HLA-A2 presenting GP100 peptide (itdqvpfsv)”. X-ray diffraction. MolNFT v1 #167485 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VM7
- Type
- protein
- Length
- 822 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A5B8RNS7, P61769, P40967
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | — | protein | 197 | — | — |
| E | — | protein | 241 | — | — |
| A | — | protein | 275 | — | A0A5B8RNS7 |
| B | — | protein | 100 | — | P61769 |
| C | — | protein | 9 | — | P40967 |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VM7 · SILv44 T cell receptor bound to HLA-A2 presenting gp100 peptide (ITDQVPFSV) · the same entry in another collection · chain E against E, TM-score 1.00
- P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98
- P40967 · AlphaFold monomer V2.0 prediction for melanocyte protein pmel (P40967) · a predicted model of the same protein · chain C against A, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A5B8RNS7
- Every structure of UniProt P61769
- Every structure of UniProt P40967
- Elsewhere: RCSB PDB 6VM7 · PDBe 6VM7 · UniProt A0A5B8RNS7 · UniProt P61769 · UniProt P40967
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