MolNFT v1 · #167467 · protein
X-ray structure of the R141 sugar 4,6-dehydratase from acanthamoeba polyphaga minivirus
6VLO: “X-ray structure of the R141 sugar 4,6-dehydratase from acanthamoeba polyphaga minivirus”. X-ray diffraction, 3 ligands (TYD, NAD, NI). MolNFT v1 #167467 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VLO
- Type
- protein
- Length
- 1,257 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5UR12
- Ligands
- TYD, NAD, NI
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 319 | — | Q5UR12 |
| C | — | protein | 312 | — | Q5UR12 |
| D | — | protein | 307 | — | Q5UR12 |
Ligands and binding sites
- TYD · Thymidine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 4 copies · chains A, B, C, D
- NI · Nickel (II) ion · metal · 2 copies · chains B, D, A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VLO · X-ray Structure of the R141 Sugar 4,6-dehydratase from Acanthamoeba polyphaga Minivirus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5UR12
- Elsewhere: RCSB PDB 6VLO · PDBe 6VLO · UniProt Q5UR12
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