MolNFT v1 · #167410 · protein + DNA
Crystal structure of wt HMBD4 complexed with T:G mismatch DNA
6VJW: “Crystal structure of wt HMBD4 complexed with T:G mismatch DNA”. X-ray diffraction, 1 ligand (ORP). MolNFT v1 #167410 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VJW
- Type
- protein + DNA
- Length
- 161 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O95243
- Ligands
- ORP
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 138 | — | O95243 |
| C | — | dna | 11 | — | — |
| D | — | dna | 12 | — | — |
Ligands and binding sites
- ORP · 2-deoxy-5-phosphono-ribose · ligand · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VJW · Crystal structure of WT hMBD4 complexed with T:G mismatch DNA · the same entry in another collection · chain A against A, TM-score 1.00
- O95243 · AlphaFold monomer V2.0 prediction for methyl-cpg-binding domain protein 4 (O95243) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O95243
- Elsewhere: RCSB PDB 6VJW · PDBe 6VJW · UniProt O95243
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