MolNFT v1 · #167347 · protein
Cryo-EM structure of VRC01.23 in complex with HIV-1 env BG505 DS.SOSIP
6VI0: “Cryo-EM structure of VRC01.23 in complex with HIV-1 env BG505 DS.SOSIP”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #167347 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VI0
- Type
- protein
- Length
- 2,418 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A, F | — | protein | 131 | — | Q2N0S6 |
| G, C, I | — | protein | 450 | — | Q2N0S6 |
| L, D, J | — | protein | 96 | — | — |
| H, E, K | — | protein | 129 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 84 copies · chains G, H, L, C, E, D, I, K, J, B, A, F
- MAN · alpha-D-mannopyranose · sugar · 36 copies · chains G, L, H, C, D, E, I, J, K
- BMA · beta-D-mannopyranose · sugar · 15 copies · chains H, G, L, E, C, D, K, I, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VI0 · Cryo-EM structure of VRC01.23 in complex with HIV-1 Env BG505 DS.SOSIP · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 6VI0 · PDBe 6VI0 · UniProt Q2N0S6
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