MolNFT v1 · #167282 · protein
Xenopus protocadherin 8.1 EC1-6
6VG1: “Xenopus protocadherin 8.1 EC1-6”. X-ray diffraction, 7 ligands (NAG, MAN, BMA). MolNFT v1 #167282 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VG1
- Type
- protein
- Length
- 1,283 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6GLU2
- Ligands
- NAG, MAN, BMA, FUC, CA, NA, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 642 | — | Q6GLU2 |
| B | — | protein | 641 | — | Q6GLU2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 4 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · 2 copies
- FUC · alpha-L-fucopyranose · sugar · 2 copies · chains B
- CA · Calcium ion · metal · 30 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VG1 · xenopus protocadherin 8.1 EC1-6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6GLU2
- Elsewhere: RCSB PDB 6VG1 · PDBe 6VG1 · UniProt Q6GLU2
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