MolNFT v1 · #167276 · protein
Crystal structure of human protocadherin 8 EC5-EC6
6VFV · Protocadherin-8: “Crystal structure of human protocadherin 8 EC5-EC6”. X-ray diffraction, 6 ligands (NAG, MAN, BMA). MolNFT v1 #167276 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VFV
- Type
- protein
- Length
- 222 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protocadherin-8
- UniProt
- O95206
- Ligands
- NAG, MAN, BMA, FUC, CA, CL
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protocadherin-8 | protein | 222 | 5% helix, 46% strand | O95206 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar
- FUC · alpha-L-fucopyranose · sugar
- CA · Calcium ion · metal · 4 copies · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 glycan (N-glycosylation, O-glycosylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O95206
- Elsewhere: RCSB PDB 6VFV · PDBe 6VFV · UniProt O95206
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