MolNFT v1 · #167181 · protein
Crystal structure of arabidopsis thaliana S-adenosylmethionine synthase 2 (ATMAT2) in complex with free methionine and ampcpp
6VD0: “Crystal structure of arabidopsis thaliana S-adenosylmethionine synthase 2 (ATMAT2) in complex with free…”. X-ray diffraction, 3 ligands (APC, MG, K). MolNFT v1 #167181 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VD0
- Type
- protein
- Length
- 1,562 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P17562
- Ligands
- APC, MG, K
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 393 | — | P17562 |
| B, C | — | protein | 390 | — | P17562 |
| D | — | protein | 389 | — | P17562 |
Ligands and binding sites
- APC · Diphosphomethylphosphonic acid adenosyl ester · ligand · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 9 copies · chains A, B, C, D
- K · Potassium ion · metal · 4 copies · chains A, B, C, D
- MPO · 3[N-morpholino]propane sulfonic acid · additive · 4 copies · chains A, B, C, D
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B
- PG4 · Tetraethylene glycol · additive · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VD0 · Crystal structure of Arabidopsis thaliana S-adenosylmethionine Synthase 2 (AtMAT2) in… · the same entry in another collection · chain A against A, TM-score 1.00
- P17562 · AlphaFold monomer V2.0 prediction for S-adenosylmethionine synthase 2 (P17562) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17562
- Elsewhere: RCSB PDB 6VD0 · PDBe 6VD0 · UniProt P17562
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