MolNFT v1 · #167128 · protein

Crystal structure of the hybrid C-terminal domain of enzyme I of the bacterial phosphotransferase system formed by hybridizing the scaffold of the thermoanaerobacter tengcongensis enzyme with the active site loops from the escherichia COLI enzyme

6VBJ · Phosphoenolpyruvate-protein phosphotransferase: “Crystal structure of the hybrid C-terminal domain of enzyme I of the bacterial phosphotransferase system…”. X-ray diffraction, 7 pockets (best druggability 0.59). MolNFT v1 #167128 on…

PDB: 6VBJ
Type: protein
Length: 626 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoenolpyruvate-protein phosphotransferase
EC: 2.7.3.9
UniProt: Q8R7R4
Pockets: 7 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Phosphoenolpyruvate-protein phosphotransferase (EC 2.7.3.9)	protein	313	52% helix, 13% strand	Q8R7R4

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	115	0.59	0.86	28	empty
2	99	0.53	0.83	26	empty
3	153	0.52	0.79	28	empty
4	180	0.46	0.75	26	empty
5	118	0.35	0.72	22	empty

Interfaces

1 interface between chains.

A–B · 1932 Å² buried · 34 hydrogen bonds · protein-protein

Compared structures

6VBJ · Crystal structure of the hybrid C-terminal domain of enzyme I of the bacterial… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8R7R4
Elsewhere: RCSB PDB 6VBJ · PDBe 6VBJ · UniProt Q8R7R4

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