MolNFT v1 · #167081 · protein
Tudor domain of tumor suppressor P53BP1 with mfp-4184
6VA5 · TP53-binding protein 1: “Tudor domain of tumor suppressor P53BP1 with mfp-4184”. X-ray diffraction, 3 ligands (QSS, SO4, UNX). MolNFT v1 #167081 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VA5
- Type
- protein
- Length
- 123 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TP53-binding protein 1
- UniProt
- Q12888
- Ligands
- QSS, SO4, UNX
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TP53-binding protein 1 | protein | 123 | 13% helix, 51% strand | Q12888 |
Ligands and binding sites
- QSS · 2-(4-methylpiperazin-1-yl)aniline · ligand · chains A
- SO4 · Sulfate ion · ion · 4 copies · chains A
- UNX · Unknown atom or ion · ion · 3 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VA5 · Tudor Domain of Tumor suppressor p53BP1 with MFP-4184 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12888
- Elsewhere: RCSB PDB 6VA5 · PDBe 6VA5 · UniProt Q12888
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