MolNFT v1 · #166975 · protein

Crystal structure of metallo beta lactamase from erythrobacter litoralis with beta mercaptoethanol in the active site

6V73 · Beta-lactamase II: “Crystal structure of metallo beta lactamase from erythrobacter litoralis with beta mercaptoethanol in the…”. X-ray diffraction, 2 ligands (ZN, CL), 1 pocket (best druggability 0.39). MolNFT v1 #166975 on…

PDB: 6V73
Type: protein
Length: 228 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-lactamase II
UniProt: Q2N9N3
Ligands: ZN, CL
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-lactamase II	protein	228	29% helix, 27% strand	Q2N9N3

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A
CL · Chloride ion · ion · chains A
BME · Beta-mercaptoethanol · additive · chains A
FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	114	0.39	0.75	21	ZN, BME

Compared structures

6V73 · Crystal Structure of Metallo Beta Lactamase from Erythrobacter litoralis with beta… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2N9N3
Elsewhere: RCSB PDB 6V73 · PDBe 6V73 · UniProt Q2N9N3

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