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Crystal structure of metallo beta lactamase from erythrobacter litoralis with beta mercaptoethanol in the active site

Analyse Crystal structure of metallo beta lactamase from erythrobacter litoralis with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6V73
Type: protein
Length: 228 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-lactamase II
UniProt: Q2N9N3
Ligands: ZN, CL
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-lactamase II	protein	228	29% helix, 27% strand	Q2N9N3

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A
CL · Chloride ion · ion · chains A
BME · Beta-mercaptoethanol · additive · chains A
FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	114	0.39	0.75	21	ZN, BME

Compared structures

6V73 · Crystal Structure of Metallo Beta Lactamase from Erythrobacter litoralis with beta… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2N9N3
Elsewhere: RCSB PDB 6V73 · PDBe 6V73 · UniProt Q2N9N3

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