MolNFT v1 · #166909 · protein
A closed pore conformation of a pentameic ligand-gated ion channel with additional N-terminal domain
6V4S: “A closed pore conformation of a pentameic ligand-gated ion channel with additional N-terminal domain”. X-ray diffraction, 3 ligands (NA, CA, CL). MolNFT v1 #166909 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6V4S
- Type
- protein
- Length
- 2,941 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- V4JF97
- Ligands
- NA, CA, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 585 | — | V4JF97 |
| E, D | — | protein | 591 | — | V4JF97 |
| C | — | protein | 588 | — | V4JF97 |
| B | — | protein | 586 | — | V4JF97 |
Ligands and binding sites
- NA · Sodium ion · metal · 7 copies · chains A, E, D, C, B
- CA · Calcium ion · metal · 5 copies · chains A, B, E, D, C
- CL · Chloride ion · ion · 5 copies · chains A, E, D, C, B
- LMT · Dodecyl-beta-D-maltoside · additive · 10 copies · chains A, B, E, D, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6V4S · A Closed pore conformation of a Pentameic ligand-gated ion channel with additional… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V4JF97
- Elsewhere: RCSB PDB 6V4S · PDBe 6V4S · UniProt V4JF97
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