MolNFT v1 · #166685 · protein
Crystal structure of bak core domain BH3-groove-dimer in complex with popc and C8E4
6UXQ: “Crystal structure of bak core domain BH3-groove-dimer in complex with popc and C8E4”. X-ray diffraction, 2 ligands (LBN, SO4). MolNFT v1 #166685 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UXQ
- Type
- protein
- Length
- 325 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q16611
- Ligands
- LBN, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 84 | — | Q16611 |
| B | — | protein | 80 | — | Q16611 |
| C | — | protein | 80 | — | Q16611 |
| D | — | protein | 81 | — | Q16611 |
Ligands and binding sites
- LBN · 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine · ligand · chains A, B
- SO4 · Sulfate ion · ion · 4 copies · chains A, B, D
- C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 8 copies · chains A, D, B, C
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6UXQ · Crystal structure of BAK core domain BH3-groove-dimer in complex with POPC and C8E4 · the same entry in another collection · chain D against D, TM-score 1.00
- Q16611 · AlphaFold monomer V2.0 prediction for BCL-2 homologous ANTAGONIST/KILLER (Q16611) · a predicted model of the same protein · chain C against A, TM-score 0.71
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16611
- Elsewhere: RCSB PDB 6UXQ · PDBe 6UXQ · UniProt Q16611
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.