MolNFT v1 · #166595 · protein + RNA
Crystal structure of the core domain of RNA helicase DDX17 with RNA pri-18A-OLIGO1
6UV4: “Crystal structure of the core domain of RNA helicase DDX17 with RNA pri-18A-OLIGO1”. X-ray diffraction, 3 ligands (ADP, BEF, MG). MolNFT v1 #166595 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UV4
- Type
- protein + RNA
- Length
- 433 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q92841
- Ligands
- ADP, BEF, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 426 | — | Q92841 |
| C | — | rna | 7 | — | — |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- BEF · Beryllium trifluoride ion · ligand · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6UV4 · Crystal structure of the core domain of RNA helicase DDX17 with RNA pri-18a-oligo1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q92841 · AlphaFold monomer V2.0 prediction for probable ATP-dependent RNA helicase DDX17 (Q92841) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92841
- Elsewhere: RCSB PDB 6UV4 · PDBe 6UV4 · UniProt Q92841
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