MolNFT v1 · #166396 · protein + DNA
Y271G DNA polymerase beta ternary complex with templating adenine and incoming R8-oxo-GTP
6UOM: “Y271G DNA polymerase beta ternary complex with templating adenine and incoming R8-oxo-GTP”. X-ray diffraction, 3 ligands (8GT, NA, MN). MolNFT v1 #166396 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UOM
- Type
- protein + DNA
- Length
- 357 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P06746
- Ligands
- 8GT, NA, MN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| T | — | dna | 16 | — | — |
| P | — | dna | 10 | — | — |
| D | — | dna | 5 | — | — |
| A | — | protein | 326 | — | P06746 |
Ligands and binding sites
- 8GT · 8-oxo-guanosine-5'-triphosphate · ligand · chains T, P, A
- NA · Sodium ion · metal · 4 copies · chains P, A, D
- MN · Manganese (II) ion · metal · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains T, D, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6UOM · Y271G DNA polymerase beta ternary complex with templating adenine and incoming r8-oxo-GTP · the same entry in another collection · chain T against T, TM-score 1.00
- P06746 · AlphaFold monomer V2.0 prediction for DNA polymerase beta (P06746) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06746
- Elsewhere: RCSB PDB 6UOM · PDBe 6UOM · UniProt P06746
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