MolNFT v1 · #166207 · protein
Artificial iron proteins: modelling the active sites in non-heme dioxygenases
6UIY · Streptavidin: “Artificial iron proteins: modelling the active sites in non-heme dioxygenases”. X-ray diffraction, 1 ligand (QG1), 1 pocket (best druggability 0.48). MolNFT v1 #166207 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6UIY
- Type
- protein
- Length
- 125 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Streptavidin
- UniProt
- P22629
- Ligands
- QG1
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Streptavidin | protein | 125 | 8% helix, 54% strand | P22629 |
Ligands and binding sites
- QG1 · {5-[(3as,4s,6ar)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-N-(2-{[(pyridin-2-yl) methyl][(pyridin-2-yl-kappan)methyl]amino-kappan}ethyl)pentanamide}iron(2+) · ligand · chains A
- ACT · Acetate ion · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.48 | 0.80 | 18 | QG1 |
Compared structures
- 6UIY · Artificial Iron Proteins: Modelling the Active Sites in Non-Heme Dioxygenases · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22629
- Elsewhere: RCSB PDB 6UIY · PDBe 6UIY · UniProt P22629
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.