MolNFT v1 · #166007 · protein
Full length glycine receptor reconstituted in lipid nanodisc in GLY/PTX-bound OPEN/BLOCKED conformation
6UD3: “Full length glycine receptor reconstituted in lipid nanodisc in GLY/PTX-bound OPEN/BLOCKED conformation”. Electron microscopy, 2 ligands (RI5, NAG). MolNFT v1 #166007 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UD3
- Type
- protein
- Length
- 1,765 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O93430
- Ligands
- RI5, NAG
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, D, B | — | protein | 353 | — | O93430 |
Ligands and binding sites
- RI5 · (1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione · ligand · chains A, C, E, D, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A, C, E, D, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6UD3 · Full length Glycine receptor reconstituted in lipid nanodisc in Gly/PTX-bound… · the same entry in another collection · chain B against B, TM-score 1.00
- O93430 · AlphaFold monomer V2.0 prediction for glycine receptor subunit ALPHAZ1 (O93430) · a predicted model of the same protein · chain C against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O93430
- Elsewhere: RCSB PDB 6UD3 · PDBe 6UD3 · UniProt O93430
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