MolNFT v1 · #165965 · protein

The structure of the streptococcus gordonii surface protein sspb in complex with tev peptide provides clues to the adherence of oral streptococcal adherence to salivary agglutinin

6UBV: “The structure of the streptococcus gordonii surface protein sspb in complex with tev peptide provides clues…”. X-ray diffraction, 4 ligands (SNZ, CA, NA). MolNFT v1 #165965 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6UBV
Type: protein
Length: 1,573 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: C9E3B4
Ligands: SNZ, CA, NA, SO4

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	392	—	C9E3B4
B	—	protein	394	—	C9E3B4
C	—	protein	399	—	C9E3B4
D	—	protein	388	—	C9E3B4

Ligands and binding sites

SNZ · N-(3,4-dihydroxyphenyl)-N'-[2-(3,4-dihydroxyphenyl) ethyl]urea · ligand · 4 copies · chains A, B, C, D
CA · Calcium ion · metal · 4 copies · chains A, B, C, D
NA · Sodium ion · metal · 3 copies · chains A, C, D
SO4 · Sulfate ion · ion · 2 copies · chains A, B, C, D
EDO · 1,2-ethanediol · additive · 3 copies · chains B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6UBV · The structure of the Streptococcus gordonii surface protein SspB in complex with TEV… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C9E3B4
Elsewhere: RCSB PDB 6UBV · PDBe 6UBV · UniProt C9E3B4

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