MolNFT v1 · #165951 · protein
Azide-triggered subtilisin SUBT_BACAM complexed with the peptide lfral
6UBE · Subtilisin bpn': “Azide-triggered subtilisin SUBT_BACAM complexed with the peptide lfral”. X-ray diffraction, 2 ligands (NA, AZI). MolNFT v1 #165951 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UBE
- Type
- protein
- Length
- 271 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Subtilisin bpn'; Peptide lfral
- Ligands
- NA, AZI
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| S | Subtilisin bpn' | protein | 266 | 32% helix, 22% strand | — |
| B | Peptide lfral | protein | 5 | 0% helix, 60% strand | — |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains S
- AZI · Azide ion · ion · 4 copies · chains S
- GOL · Glycerol · additive · 3 copies · chains S
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- S–B · 553 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6UBE · Azide-triggered subtilisin SUBT_BACAM complexed with the peptide LFRAL · the same entry in another collection · chain S against S, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6UBE · PDBe 6UBE
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