MolNFT v1 · #165873 · protein + DNA
Crystal structure of DNMT3B(N779A)-DNMT3L in complex with cpgpt DNA
6U90: “Crystal structure of DNMT3B(N779A)-DNMT3L in complex with cpgpt DNA”. X-ray diffraction. MolNFT v1 #165873 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6U90
- Type
- protein + DNA
- Length
- 1,020 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UBC3, Q9UJW3
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 292 | — | Q9UBC3 |
| B, C | — | protein | 193 | — | Q9UJW3 |
| E, F | — | dna | 25 | — | — |
Ligands and binding sites
- GOL · Glycerol · additive · 2 copies · chains A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6U90 · Crystal structure of DNMT3B(N779A)-DNMT3L in complex with CpGpT DNA · the same entry in another collection · chain F against F, TM-score 1.00
- Q9UBC3 · AlphaFold monomer V2.0 prediction for DNA (cytosine-5)-methyltransferase 3B (Q9UBC3) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q9UJW3 · AlphaFold monomer V2.0 prediction for DNA (cytosine-5)-methyltransferase 3-like (Q9UJW3) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBC3
- Every structure of UniProt Q9UJW3
- Elsewhere: RCSB PDB 6U90 · PDBe 6U90 · UniProt Q9UBC3 · UniProt Q9UJW3
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