MolNFT v1 · #165836 · RNA

RNA hairpin structure containing one tna nucleotide as primer

6U7Z · RNA (5'- R(*CP*UP*GP*CP*UP*GP*GP*CP*UP*AP*AP*GP*GP*GP*CP*CP*…: “RNA hairpin structure containing one tna nucleotide as primer”. X-ray diffraction, 1 ligand (C). MolNFT v1 #165836 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 6U7Z
Type: RNA
Length: 34 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'- R(*CP*UP*GP*CP*UP*GP*GP*CP*UP*AP*AP*GP*GP*GP*CP*CP*GP*AP*AP*AP*GP*(TG ))-3')…
Ligands: C

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (5'- R(CPUPGPCPUPGPGPCPUPAPAPGPGPGPCPCPGPAPAPAPGP(TG ))-3')	rna	22	—	—
B	RNA (5'-R(CPUPAPUPGPCPCPUPGPCPUPG)-3')	rna	12	—	—

Ligands and binding sites

C · Cytidine-5'-monophosphate · ligand · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 710 Å² buried · 63 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

6U7Z · RNA hairpin structure containing one TNA nucleotide as primer · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6U7Z · PDBe 6U7Z

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