MolNFT v1 · #165292 · protein + RNA

X-ray structure of roquin roq domain in complex with a UCP3 CDE1 sl RNA motif

6TQB: “X-ray structure of roquin roq domain in complex with a UCP3 CDE1 sl RNA motif”. X-ray diffraction, 3 ligands (NA, MG, CL). MolNFT v1 #165292 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6TQB
Type: protein + RNA
Length: 172 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q4VGL6
Ligands: NA, MG, CL

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	153	—	Q4VGL6
B	—	rna	19	—	—

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A, B
MG · Magnesium ion · metal · chains B
CL · Chloride ion · ion · 2 copies · chains B
EDO · 1,2-ethanediol · additive · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6TQB · X-ray structure of Roquin ROQ domain in complex with a UCP3 CDE1 SL RNA motif · the same entry in another collection · chain A against A, TM-score 1.00
Q4VGL6 · AlphaFold monomer V2.0 prediction for roquin-1 (Q4VGL6) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4VGL6
Elsewhere: RCSB PDB 6TQB · PDBe 6TQB · UniProt Q4VGL6

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.