MolNFT v1 · #165222 · protein
Crystal structure of three N-terminal domains of the type V pili tip protein MFA5 from porphyromonas gingivalis
6TO1 · Minor fimbrium subunit MFA5: “Crystal structure of three N-terminal domains of the type V pili tip protein MFA5 from porphyromonas…”. X-ray diffraction, 3 ligands (MG, CA, PO4), 1 pocket (best druggability 0.37). MolNFT v1 #165222…
- PDB
- 6TO1
- Type
- protein
- Length
- 566 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Minor fimbrium subunit MFA5
- UniProt
- B2RHG5
- Ligands
- MG, CA, PO4
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Minor fimbrium subunit MFA5 | protein | 566 | 20% helix, 34% strand | B2RHG5 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
- CA · Calcium ion · metal · chains A
- PO4 · Phosphate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.37 | 0.73 | 25 | PO4 |
Modifications
Observed in the structure: 1 isopeptide (isopeptide).
Compared structures
- 6TO1 · Crystal structure of three N-terminal domains of the type V pili tip protein Mfa5 from… · the same entry in another collection · chain A against A, TM-score 1.00
- B2RHG5 · AlphaFold monomer V2.0 prediction for minor fimbrium subunit MFA5 (B2RHG5) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2RHG5
- Elsewhere: RCSB PDB 6TO1 · PDBe 6TO1 · UniProt B2RHG5
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