MolNFT v1 · #165118 · protein

Femtosecond to millisecond structural changes in a light-driven sodium pump: dark structure in neutral conditions with attached light datasets at 800FS, 2PS, 100PS, 1NS, 16NS, 1US, 30US, 150US, 1MS and 20MS

6TK6 · Sodium pumping rhodopsin: “Femtosecond to millisecond structural changes in a light-driven sodium pump: dark structure in neutral…”. X-ray diffraction, 2 ligands (LFA, RET), 1 pocket (best druggability 0.73). MolNFT v1 #165118 on…

PDB: 6TK6
Type: protein
Length: 265 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sodium pumping rhodopsin
UniProt: N0DKS8
Ligands: LFA, RET
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sodium pumping rhodopsin	protein	265	76% helix, 3% strand	N0DKS8

Ligands and binding sites

LFA · Eicosane · ligand · 26 copies · chains A
RET · Retinal · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	143	0.73	0.92	26	RET, LFA

Modifications

Observed in the structure: 1 cofactor (retinal Schiff base).

Compared structures

6TK6 · Femtosecond to millisecond structural changes in a light-driven sodium pump: Dark… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt N0DKS8
Elsewhere: RCSB PDB 6TK6 · PDBe 6TK6 · UniProt N0DKS8

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