MolNFT v1 · #165031 · protein

Crystal structure of mature wildtype primitive phytochelatin synthase from nostoc spec. - ALR0975

6TH5 · ALR0975 protein: “Crystal structure of mature wildtype primitive phytochelatin synthase from nostoc spec. - ALR0975”. X-ray diffraction, 1 ligand (CA), 5 pockets (best druggability 0.71). MolNFT v1 #165031 on GenesisL1: 3D…

PDB: 6TH5
Type: protein
Length: 427 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ALR0975 protein
UniProt: Q8YY76
Ligands: CA
Pockets: 5 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 38% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ALR0975 protein	protein	213	38% helix, 21% strand	Q8YY76
B	ALR0975 protein	protein	214	39% helix, 21% strand	Q8YY76

Ligands and binding sites

CA · Calcium ion · metal · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	282	0.71	0.85	32	empty
2	161	0.46	0.76	30	empty
3	169	0.42	0.74	32	empty
4	70	0.36	0.78	18	empty
5	62	0.33	0.77	16	CA

Interfaces

1 interface between chains.

A–B · 1264 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

6TH5 · Crystal structure of mature wildtype primitive Phytochelatin synthase from Nostoc spec.… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8YY76
Elsewhere: RCSB PDB 6TH5 · PDBe 6TH5 · UniProt Q8YY76

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