MolNFT v1 · #164928 · protein

Cryo-EM structure of euglena gracilis mitochondrial ATP synthase, OSCP/F1/C-ring, rotational state 2

6TDZ: “Cryo-EM structure of euglena gracilis mitochondrial ATP synthase, OSCP/F1/C-ring, rotational state 2”. Electron microscopy, 4 ligands (ATP, ADP, TRT). MolNFT v1 #164928 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6TDZ
Type: protein
Length: 5,283 residues
Chains: 26
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Ligands: ATP, ADP, TRT, MG

Structure

electron microscopy · 13 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
M	—	protein	243	—	—
h	—	protein	48	—	—
c	—	protein	50	—	—
G	—	protein	303	—	—
H	—	protein	160	—	—
I	—	protein	66	—	—
O, P, Q, R, S, T, U, V, W, X	—	protein	81	—	—
B	—	protein	526	—	—
C	—	protein	530	—	—
A	—	protein	527	—	—
E, F, D	—	protein	487	—	—
K, L, J	—	protein	170	—	—
N	—	protein	49	—	—

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains B, E, C, F, A, D
ADP · Adenosine-5'-diphosphate · ligand · chains A, E
TRT · Fragment of triton X-100 · ligand · chains C, F
MG · Magnesium ion · metal · 5 copies · chains B, C, A, E, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6TDZ · Cryo-EM structure of Euglena gracilis mitochondrial ATP synthase, OSCP/F1/c-ring… · the same entry in another collection · chain h against h, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6TDZ · PDBe 6TDZ

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