Research workbench
Cryo-EM structure of euglena gracilis mitochondrial ATP synthase, OSCP/F1/C-ring, rotational state 2
Analyse Cryo-EM structure of euglena gracilis mitochondrial ATP synthase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TDZ
- Type
- protein
- Length
- 5,283 residues
- Chains
- 26
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- ATP, ADP, TRT, MG
Structure
electron microscopy · 13 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| M | — | protein | 243 | — | — |
| h | — | protein | 48 | — | — |
| c | — | protein | 50 | — | — |
| G | — | protein | 303 | — | — |
| H | — | protein | 160 | — | — |
| I | — | protein | 66 | — | — |
| O, P, Q, R, S, T, U, V, W, X | — | protein | 81 | — | — |
| B | — | protein | 526 | — | — |
| C | — | protein | 530 | — | — |
| A | — | protein | 527 | — | — |
| E, F, D | — | protein | 487 | — | — |
| K, L, J | — | protein | 170 | — | — |
| N | — | protein | 49 | — | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains B, E, C, F, A, D
- ADP · Adenosine-5'-diphosphate · ligand · chains A, E
- TRT · Fragment of triton X-100 · ligand · chains C, F
- MG · Magnesium ion · metal · 5 copies · chains B, C, A, E, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6TDZ · Cryo-EM structure of Euglena gracilis mitochondrial ATP synthase, OSCP/F1/c-ring… · the same entry in another collection · chain h against h, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6TDZ · PDBe 6TDZ
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