MolNFT v1 · #164787 · protein

Crystal structrue of rsl W31A lectin mutant in complex with alpha- methylfucoside

6T9B · Fucose-binding lectin protein: “Crystal structrue of rsl W31A lectin mutant in complex with alpha- methylfucoside”. X-ray diffraction, 2 ligands (MFU, GLY), 7 pockets (best druggability 0.77). MolNFT v1 #164787 on GenesisL1: 3D…

PDB: 6T9B
Type: protein
Length: 788 residues
Chains: 9
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fucose-binding lectin protein
UniProt: A0A0S4TLR1
Ligands: MFU, GLY
Pockets: 7 · best druggability 0.77

Structure

x-ray diffraction · 4 distinct chains · 0% helix, 68% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C, D, E, G	Fucose-binding lectin protein	protein	87	0% helix, 69% strand	A0A0S4TLR1
B, H	Fucose-binding lectin protein	protein	88	0% helix, 68% strand	A0A0S4TLR1
F	Fucose-binding lectin protein	protein	89	0% helix, 67% strand	A0A0S4TLR1
I	Fucose-binding lectin protein	protein	88	0% helix, 67% strand	A0A0S4TLR1

Ligands and binding sites

MFU · methyl alpha-L-fucopyranoside · ligand · 18 copies · chains A, B, C, D, E, F, G, H, I
GLY · Glycine · ligand · 8 copies · chains A, B, C, D, E, G, H, I

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	801	0.77	0.81	69	empty
2	851	0.77	0.81	83	empty
3	634	0.76	0.82	53	empty
4	534	0.68	0.78	62	MFU
5	69	0.29	0.73	20	MFU

Interfaces

13 interfaces between chains.

G–I · 795 Å² buried · 10 hydrogen bonds · protein-protein
D–F · 764 Å² buried · 11 hydrogen bonds · protein-protein
D–E · 754 Å² buried · 14 hydrogen bonds · protein-protein
E–F · 747 Å² buried · 10 hydrogen bonds · protein-protein
H–I · 742 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

6T9B · Crystal structrue of RSL W31A lectin mutant in complex with alpha-methylfucoside · the same entry in another collection · chain I against I, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0S4TLR1
Elsewhere: RCSB PDB 6T9B · PDBe 6T9B · UniProt A0A0S4TLR1

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.