MolNFT v1 · #164773 · protein + DNA

Stalled ftsk motor domain bound to dsdna end

6T8O: “Stalled ftsk motor domain bound to dsdna end”. Electron microscopy, 1 ligand (ADP). MolNFT v1 #164773 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6T8O
Type: protein + DNA
Length: 2,400 residues
Chains: 8
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9I0M3
Ligands: ADP

Structure

electron microscopy · 8 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	395	—	Q9I0M3
B	—	protein	392	—	Q9I0M3
C	—	protein	398	—	Q9I0M3
D	—	protein	396	—	Q9I0M3
E	—	protein	396	—	Q9I0M3
F	—	protein	397	—	Q9I0M3
G	—	dna	13	—	—
H	—	dna	13	—	—

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 6 copies · chains A, B, C, D, E, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6T8O · Stalled FtsK motor domain bound to dsDNA end · the same entry in another collection · chain H against H, TM-score 1.00
Q9I0M3 · AlphaFold monomer V2.0 prediction for DNA translocase ftsk (Q9I0M3) · a predicted model of the same protein · chain F against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9I0M3
Elsewhere: RCSB PDB 6T8O · PDBe 6T8O · UniProt Q9I0M3

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