MolNFT v1 · #164766 · protein + DNA
Cryo-EM structure of the DNA-bound pold-PCNA processive complex from P. abyssi
6T8H: “Cryo-EM structure of the DNA-bound pold-PCNA processive complex from P. abyssi”. Electron microscopy, 2 ligands (ZN, FE). MolNFT v1 #164766 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6T8H
- Type
- protein + DNA
- Length
- 2,380 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UYX8, Q9V2F3
- Ligands
- ZN, FE
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E, C, D | — | protein | 246 | — | Q9UYX8 |
| A | — | protein | 420 | — | Q9V2F3 |
| B | — | protein | 1188 | — | — |
| P | — | dna | 17 | — | — |
| T | — | dna | 17 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6T8H · Cryo-EM structure of the DNA-bound PolD-PCNA processive complex from P. abyssi · the same entry in another collection · chain T against T, TM-score 1.00
- Q9V2F3 · AlphaFold monomer V2.0 prediction for DNA polymerase II small subunit (Q9V2F3) · a predicted model of the same protein · chain A against A, TM-score 1.00
- Q9UYX8 · AlphaFold monomer V2.0 prediction for DNA polymerase sliding clamp (Q9UYX8) · a predicted model of the same protein · chain E against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UYX8
- Every structure of UniProt Q9V2F3
- Elsewhere: RCSB PDB 6T8H · PDBe 6T8H · UniProt Q9UYX8 · UniProt Q9V2F3
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