MolNFT v1 · #164763 · protein
Crystal structure of native xylose isomerase from piromyces E2 grown in yeast, in complex with xylose
6T8E: “Crystal structure of native xylose isomerase from piromyces E2 grown in yeast, in complex with xylose”. X-ray diffraction, 5 ligands (XLS, XYS, XYP). MolNFT v1 #164763 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6T8E
- Type
- protein
- Length
- 1,744 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9P8C9
- Ligands
- XLS, XYS, XYP, CA, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 436 | — | Q9P8C9 |
Ligands and binding sites
- XLS · D-xylose · ligand · 4 copies · chains A, B, C, D
- XYS · alpha-D-xylopyranose · sugar · 11 copies · chains A, D, C, B
- XYP · beta-D-xylopyranose · sugar · 7 copies · chains A, B, C, D
- CA · Calcium ion · metal · 8 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 7 copies · chains A, D, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6T8E · Crystal structure of native xylose isomerase from Piromyces E2 grown in yeast, in complex… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9P8C9
- Elsewhere: RCSB PDB 6T8E · PDBe 6T8E · UniProt Q9P8C9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.