MolNFT v1 · #164711 · protein
Y201W mutant of the orange carotenoid protein from synechocystis at pH 5.5
6T6M · Orange carotenoid-binding protein: “Y201W mutant of the orange carotenoid protein from synechocystis at pH 5.5”. X-ray diffraction, 2 ligands (ECH, HIS), 4 pockets (best druggability 0.87). MolNFT v1 #164711 on GenesisL1: 3D…
- PDB
- 6T6M
- Type
- protein
- Length
- 307 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orange carotenoid-binding protein
- UniProt
- P74102
- Ligands
- ECH, HIS
- Pockets
- 4 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Orange carotenoid-binding protein | protein | 307 | 48% helix, 18% strand | P74102 |
Ligands and binding sites
- ECH · beta,beta-caroten-4-one · ligand · chains A
- HIS · Histidine · ligand · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 510 | 0.87 | 0.93 | 51 | ECH |
| 2 | 155 | 0.43 | 0.75 | 28 | empty |
| 3 | 60 | 0.32 | 0.76 | 13 | GOL |
| 4 | 54 | 0.28 | 0.75 | 18 | empty |
Compared structures
- 6T6M · Y201W mutant of the orange carotenoid protein from Synechocystis at pH 5.5 · the same entry in another collection · chain A against A, TM-score 1.00
- P74102 · AlphaFold monomer V2.0 prediction for orange carotenoid-binding protein (P74102) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P74102
- Elsewhere: RCSB PDB 6T6M · PDBe 6T6M · UniProt P74102
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