Research workbench
Y201W mutant of the orange carotenoid protein from synechocystis at pH 5.5
Analyse Y201W mutant of the orange carotenoid protein from synechocystis at pH 5.5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6T6M
- Type
- protein
- Length
- 307 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orange carotenoid-binding protein
- UniProt
- P74102
- Ligands
- ECH, HIS
- Pockets
- 4 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Orange carotenoid-binding protein | protein | 307 | 48% helix, 18% strand | P74102 |
Ligands and binding sites
- ECH · beta,beta-caroten-4-one · ligand · chains A
- HIS · Histidine · ligand · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 510 | 0.87 | 0.93 | 51 | ECH |
| 2 | 155 | 0.43 | 0.75 | 28 | empty |
| 3 | 60 | 0.32 | 0.76 | 13 | GOL |
| 4 | 54 | 0.28 | 0.75 | 18 | empty |
Compared structures
- 6T6M · Y201W mutant of the orange carotenoid protein from Synechocystis at pH 5.5 · the same entry in another collection · chain A against A, TM-score 1.00
- P74102 · AlphaFold monomer V2.0 prediction for orange carotenoid-binding protein (P74102) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P74102
- Elsewhere: RCSB PDB 6T6M · PDBe 6T6M · UniProt P74102
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