MolNFT v1 · #164663 · protein
Thrombin in complex with methylbenzylamine
6T55: “Thrombin in complex with methylbenzylamine”. X-ray diffraction, 4 ligands (02N, NAG, NA). MolNFT v1 #164663 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6T55
- Type
- protein
- Length
- 290 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00734, P09945
- Ligands
- 02N, NAG, NA, PO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 29 | — | P00734 |
| H | — | protein | 250 | — | P00734 |
| I | — | protein | 11 | — | P09945 |
Ligands and binding sites
- 02N · 1-(4-methylphenyl)methanamine · ligand · chains H
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains H
- NA · Sodium ion · metal · 2 copies · chains H
- PO4 · Phosphate ion · ion · chains H
- GOL · Glycerol · additive · chains H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6T55 · Thrombin in Complex with Methylbenzylamine · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00734
- Every structure of UniProt P09945
- Elsewhere: RCSB PDB 6T55 · PDBe 6T55 · UniProt P00734 · UniProt P09945
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