GL1X · GenesisL1 explorer

MolNFT v1 · #164435 · protein

GH51 a-L-arabinofuranosidase soaked with aziridine inhibitor

6SXV: “GH51 a-L-arabinofuranosidase soaked with aziridine inhibitor”. X-ray diffraction, 2 ligands (LXE, ETE). MolNFT v1 #164435 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6SXV
Type
protein
Length
998 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9XBQ3
Ligands
LXE, ETE

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B—protein499—Q9XBQ3

Ligands and binding sites

  • LXE · [(1~{S},2~{S},3~{S},4~{S})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]azanium · ligand · 2 copies · chains A, B
  • ETE · 2-{2-[2-2-(methoxy-ethoxy)-ethoxy]-ethoxy}-ethanol · ligand · chains B
  • GOL · Glycerol · additive · 9 copies · chains A, B
  • PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B
  • PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6SXV · GH51 a-l-arabinofuranosidase soaked with aziridine inhibitor · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9XBQ3 · AlphaFold monomer V2.0 prediction for intracellular exo… · a predicted model of the same protein · chain A against A, TM-score 1.00

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