MolNFT v1 · #164396 · protein + RNA
IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of AIF1 in P. abyssi
6SWD: “IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of…”. Electron microscopy, 2 ligands (MG, ZN). MolNFT v1 #164396 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SWD
- Type
- protein + RNA
- Length
- 3,357 residues
- Chains
- 19
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9V2K7, Q9V191, G8ZFK7, P61992, Q9V1U8, Q9V1V5, Q9UYS3, Q9V1V0, Q9UZL4, P62010, P61994, Q9V2K9, Q9V1U5, Q9UY20, Q9UXZ3, Q9V138
- Ligands
- MG, ZN
Structure
electron microscopy · 19 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 2 | — | rna | 1044 | — | — |
| A | — | protein | 188 | — | Q9V2K7 |
| B | — | protein | 196 | — | Q9V191 |
| C | — | protein | 61 | — | G8ZFK7 |
| D | — | protein | 175 | — | P61992 |
| E | — | protein | 242 | — | Q9V1U8 |
| F | — | protein | 229 | — | Q9V1V5 |
| G | — | protein | 124 | — | Q9UYS3 |
| I | — | protein | 129 | — | Q9V1V0 |
| J | — | protein | 126 | — | Q9UZL4 |
| M | — | protein | 128 | — | P62010 |
| N | — | protein | 146 | — | P61994 |
| Q | — | protein | 152 | — | Q9V2K9 |
| R | — | protein | 109 | — | Q9V1U5 |
| V | — | protein | 94 | — | Q9UY20 |
| W | — | protein | 63 | — | Q9UXZ3 |
| 0 | — | protein | 36 | — | — |
| 5 | — | rna | 20 | — | — |
| 6 | — | protein | 95 | — | Q9V138 |
Ligands and binding sites
- MG · Magnesium ion · metal · 25 copies · chains 2, 5
- ZN · Zinc ion · metal · 5 copies · chains C, F, R, W
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6SWD · IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation… · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9V2K7
- Every structure of UniProt Q9V191
- Every structure of UniProt G8ZFK7
- Every structure of UniProt P61992
- Every structure of UniProt Q9V1U8
- Every structure of UniProt Q9V1V5
- Every structure of UniProt Q9UYS3
- Every structure of UniProt Q9V1V0
- Every structure of UniProt Q9UZL4
- Every structure of UniProt P62010
- Every structure of UniProt P61994
- Every structure of UniProt Q9V2K9
- Every structure of UniProt Q9V1U5
- Every structure of UniProt Q9UY20
- Every structure of UniProt Q9UXZ3
- Every structure of UniProt Q9V138
- Elsewhere: RCSB PDB 6SWD · PDBe 6SWD · UniProt Q9V2K7 · UniProt Q9V191 · UniProt G8ZFK7 · UniProt P61992 · UniProt Q9V1U8 · UniProt Q9V1V5 · UniProt Q9UYS3 · UniProt Q9V1V0 · UniProt Q9UZL4 · UniProt P62010 · UniProt P61994 · UniProt Q9V2K9 · UniProt Q9V1U5 · UniProt Q9UY20 · UniProt Q9UXZ3 · UniProt Q9V138
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