MolNFT v1 · #164389 · protein
The structure of arap, an arabinose binding protein from geobacillus stearothermophilus
6SW4: “The structure of arap, an arabinose binding protein from geobacillus stearothermophilus”. X-ray diffraction, 4 pockets (best druggability 0.71). MolNFT v1 #164389 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SW4
- Type
- protein
- Length
- 587 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Arabinose binding protein
- UniProt
- B3EYL5
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Arabinose binding protein | protein | 290 | 44% helix, 22% strand | B3EYL5 |
| B | Arabinose binding protein | protein | 297 | 42% helix, 20% strand | B3EYL5 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 592 | 0.71 | 0.79 | 63 | empty |
| 2 | 457 | 0.67 | 0.79 | 52 | empty |
| 3 | 74 | 0.55 | 0.87 | 14 | empty |
| 4 | 123 | 0.42 | 0.76 | 32 | empty |
Interfaces
1 interface between chains.
- A–B · 1535 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 6SW4 · The structure of AraP, an arabinose binding protein from Geobacillus stearothermophilus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3EYL5
- Elsewhere: RCSB PDB 6SW4 · PDBe 6SW4 · UniProt B3EYL5
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