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The structure of arap, an arabinose binding protein from geobacillus stearothermophilus

Analyse The structure of arap, an arabinose binding protein from geobacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6SW4
Type: protein
Length: 587 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Arabinose binding protein
UniProt: B3EYL5
Pockets: 4 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 43% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Arabinose binding protein	protein	290	44% helix, 22% strand	B3EYL5
B	Arabinose binding protein	protein	297	42% helix, 20% strand	B3EYL5

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	592	0.71	0.79	63	empty
2	457	0.67	0.79	52	empty
3	74	0.55	0.87	14	empty
4	123	0.42	0.76	32	empty

Interfaces

1 interface between chains.

A–B · 1535 Å² buried · 19 hydrogen bonds · protein-protein

Compared structures

6SW4 · The structure of AraP, an arabinose binding protein from Geobacillus stearothermophilus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3EYL5
Elsewhere: RCSB PDB 6SW4 · PDBe 6SW4 · UniProt B3EYL5

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