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MolNFT v1 · #16430 · protein

Crystal structure of the complex between M182T mutant of tem-1 and a boronic acid inhibitor (cxb)

1NYM · Beta-lactamase tem: “Crystal structure of the complex between M182T mutant of tem-1 and a boronic acid inhibitor (cxb)”. X-ray diffraction, 3 ligands (CXB, K, PO4), 1 pocket (best druggability 0.32). MolNFT v1 #16430 on GenesisL1…

PDB
1NYM
Type
protein
Length
263 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Beta-lactamase tem
EC
3.5.2.6
UniProt
P62593
Ligands
CXB, K, PO4
Pockets
1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ABeta-lactamase tem (EC 3.5.2.6)protein26344% helix, 17% strandP62593

Ligands and binding sites

  • CXB · [(2-amino-alpha-methoxyimino-4-thiazolylacetyl)amino]methylboronic acid · ligand · chains A
  • K · Potassium ion · metal · 3 copies · chains A
  • PO4 · Phosphate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
1860.320.7421CXB

Modifications

Observed in the structure: 1 covalent, 1 disulfide (covalent ligand, disulfide).

Compared structures

  • 1NYM · Crystal Structure of the complex between M182T mutant of TEM-1 and a boronic acid… · the same entry in another collection · chain A against A, TM-score 1.00
  • P62593 · AlphaFold monomer V2.0 prediction for beta-lactamase tem (P62593) · a predicted model of the same protein · chain A against A, TM-score 1.00

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