MolNFT v1 · #16412 · protein

Solution structure of the 30S ribosomal protein S28E from pyrococcus horikoshii. northeast structural genomics consortium target JR19.

1NY4: “Solution structure of the 30S ribosomal protein S28E from pyrococcus horikoshii. northeast structural…”. Solution nmr, 1 pocket (best druggability 0.42). MolNFT v1 #16412 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1NY4
Type: protein
Length: 71 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 30S ribosomal protein S28E
UniProt: P61030
Pockets: 1 · best druggability 0.42

Structure

solution nmr · 1 distinct chain · 0% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	30S ribosomal protein S28E	protein	71	0% helix, 35% strand	P61030

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	73	0.42	0.80	16	empty

Compared structures

1NY4 · Solution structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii.… · the same entry in another collection · chain A against A, TM-score 1.00
P61030 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S28E (P61030) · a predicted model of the same protein · chain A against A, TM-score 0.67

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P61030
Elsewhere: RCSB PDB 1NY4 · PDBe 1NY4 · UniProt P61030

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