Research workbench
Solution structure of the 30S ribosomal protein S28E from pyrococcus horikoshii. northeast structural genomics consortium target JR19.
Analyse Solution structure of the 30S ribosomal protein S28E from pyrococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NY4
- Type
- protein
- Length
- 71 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 30S ribosomal protein S28E
- UniProt
- P61030
- Pockets
- 1 · best druggability 0.42
Structure
solution nmr · 1 distinct chain · 0% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30S ribosomal protein S28E | protein | 71 | 0% helix, 35% strand | P61030 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.42 | 0.80 | 16 | empty |
Compared structures
- 1NY4 · Solution structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii.… · the same entry in another collection · chain A against A, TM-score 1.00
- P61030 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S28E (P61030) · a predicted model of the same protein · chain A against A, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61030
- Elsewhere: RCSB PDB 1NY4 · PDBe 1NY4 · UniProt P61030
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