MolNFT v1 · #164107 · protein
Cryo-EM structure of nanodisc reconstituted yeast ALG6 in complex with 6AG9 Fab
6SNI: “Cryo-EM structure of nanodisc reconstituted yeast ALG6 in complex with 6AG9 Fab”. Electron microscopy, 2 ligands (PTY, Y01). MolNFT v1 #164107 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SNI
- Type
- protein
- Length
- 918 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q12001
- Ligands
- PTY, Y01
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | — | protein | 479 | — | Q12001 |
| H | — | protein | 225 | — | — |
| L | — | protein | 214 | — | — |
Ligands and binding sites
- PTY · Phosphatidylethanolamine · ligand · 5 copies · chains X
- Y01 · Cholesterol hemisuccinate · ligand · 3 copies · chains X, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6SNI · Cryo-EM structure of nanodisc reconstituted yeast ALG6 in complex with 6AG9 Fab · the same entry in another collection · chain X against X, TM-score 1.00
- Q12001 · AlphaFold monomer V2.0 prediction for dolichyl pyrophosphate MAN9GLCNAC2… · a predicted model of the same protein · chain X against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12001
- Elsewhere: RCSB PDB 6SNI · PDBe 6SNI · UniProt Q12001
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.