MolNFT v1 · #164060 · protein

Wild type immunoglobulin light chain (wt-1)

6SM1 · Immunoglobulin lambda variable 2-14: “Wild type immunoglobulin light chain (wt-1)”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #164060 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6SM1
Type: protein
Length: 111 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Immunoglobulin lambda variable 2-14
UniProt: P01704
Ligands: CA

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Immunoglobulin lambda variable 2-14	protein	111	3% helix, 48% strand	P01704

Ligands and binding sites

CA · Calcium ion · metal · chains A
PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A
PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6SM1 · Wild type immunoglobulin light chain (WT-1) · the same entry in another collection · chain A against A, TM-score 1.00
P01704 · AlphaFold monomer V2.0 prediction for immunoglobulin lambda variable 2-14 (P01704) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01704
Elsewhere: RCSB PDB 6SM1 · PDBe 6SM1 · UniProt P01704

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