GL1X · GenesisL1 explorer

MolNFT v1 · #163837 · protein

TEAD4 bound to a FAM181B peptide

6SEO · Transcriptional enhancer factor tef-3: “TEAD4 bound to a FAM181B peptide”. X-ray diffraction, 2 ligands (ACE, NH2). MolNFT v1 #163837 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6SEO
Type
protein
Length
221 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Transcriptional enhancer factor tef-3; Protein FAM181B
UniProt
Q15561, A6NEQ2
Ligands
ACE, NH2

Structure

x-ray diffraction · 2 distinct chains · 20% helix, 49% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ATranscriptional enhancer factor tef-3protein20519% helix, 53% strandQ15561
LProtein FAM181Bprotein1638% helix, 0% strandA6NEQ2

Ligands and binding sites

  • ACE · Acetyl group · ligand · chains L
  • NH2 · Amino group · ion · chains L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–L · 762 Ų buried · 14 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 covalent, 1 modified (covalent ligand, nonstandard).

Compared structures

  • 6SEO · TEAD4 bound to a FAM181B peptide · the same entry in another collection · chain A against A, TM-score 1.00
  • Q15561 · AlphaFold monomer V2.0 prediction for transcriptional enhancer factor tef-3 (Q15561) · a predicted model of the same protein · chain A against A, TM-score 0.98
  • A6NEQ2 · AlphaFold monomer V2.0 prediction for protein FAM181B (A6NEQ2) · a predicted model of the same protein · chain L against A, TM-score 0.54

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