MolNFT v1 · #163800 · protein
Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment J82
6SDN: “Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment J82”. X-ray diffraction, 3 ligands (4NC, ZN, SO4), 2 pockets (best druggability 0.77). MolNFT v1 #163800 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6SDN
- Type
- protein
- Length
- 360 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Farnesyl diphosphate synthase
- UniProt
- Q8WS26
- Ligands
- 4NC, ZN, SO4
- Pockets
- 2 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 75% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Farnesyl diphosphate synthase | protein | 360 | 75% helix, 2% strand | Q8WS26 |
Ligands and binding sites
- 4NC · 4-nitrocatechol · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 680 | 0.77 | 0.82 | 58 | ZN, SO4 |
| 2 | 63 | 0.53 | 0.87 | 18 | 4NC |
Compared structures
- 6SDN · Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment j82 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8WS26
- Elsewhere: RCSB PDB 6SDN · PDBe 6SDN · UniProt Q8WS26
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