MolNFT v1 · #163721 · protein

Structure of type II terpene cyclase mste from scytonema in complex with farnesyl dihydroxybenzoate

6SBC: “Structure of type II terpene cyclase mste from scytonema in complex with farnesyl dihydroxybenzoate”. X-ray diffraction, 3 ligands (L4H, NA, CL), 4 pockets (best druggability 0.78). MolNFT v1 #163721 on GenesisL1: 3D structure…

PDB: 6SBC
Type: protein
Length: 352 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mste
UniProt: A0A2D1CM82
Ligands: L4H, NA, CL
Pockets: 4 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mste	protein	352	53% helix, 7% strand	A0A2D1CM82

Ligands and binding sites

L4H · farnesyl dihydroxybenzoate · ligand · chains A
NA · Sodium ion · metal · 2 copies · chains A
CL · Chloride ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	245	0.78	0.90	29	L4H
2	143	0.43	0.75	27	empty
3	105	0.38	0.75	20	empty
4	93	0.36	0.75	21	CL

Compared structures

6SBC · Structure of type II terpene cyclase MstE from Scytonema in complex with farnesyl… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2D1CM82
Elsewhere: RCSB PDB 6SBC · PDBe 6SBC · UniProt A0A2D1CM82

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